Good Learning and Implicit Model Enumeration

MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation

Nonabelian Gauge Theories on Noncommutative Spaces

In this paper, we describe a method for obtaining the nonabelian Seiberg-Witten map for any gauge group and to any order in theta. The equations defining the Seiberg-Witten map are expressed using a coboundary operator, so that they can be solved by constructing a corresponding homotopy operator. The ambiguities, of both the gauge and covariant type, which arise in this map are manifest in our formalism.Comment: 14 pages, latex, Talk presented at 2001: A Spacetime Odyssey - Michigan Center for Theoretical Physics, some typos correcte

Fundamental Vibrational Transitions of HCl Detected in CRL 2136

We would like to understand the chemistry of dense clouds and their hot cores more quantitatively by obtaining more complete knowledge of the chemical species present in them. We have obtained high-resolution infrared absorption spectroscopy at 3-4 um toward the bright infrared source CRL 2136. The fundamental vibration-rotation band of HCl has been detected within a dense cloud for the first time. The HCl is probably located in the warm compact circumstellar envelope or disk of CRL 2136. The fractional abundance of HCl is (4.9-8.7)e-8, indicating that approximately 20 % of the elemental chlorine is in gaseous HCl. The kinetic temperature of the absorbing gas is 250 K, half the value determined from infrared spectroscopy of 13CO and water. The percentage of chlorine in HCl is approximately that expected for gas at this temperature. The reason for the difference in temperatures between the various molecular species is unknown.Comment: 6 pages, 3 figures, A&A in pres

Absorption Line Survey of H3+ toward the Galactic Center Sources III. Extent of the Warm and Diffuse Clouds

We present follow-up observations to those of Geballe & Oka (2010), who found high column densities of H3+ ~100 pc off of the Galactic center (GC) on the lines of sight to 2MASS J17432173-2951430 (J1743) and 2MASS J17470898-2829561 (J1747). The wavelength coverages on these sightlines have been extended in order to observe two key transitions of H3+, R(3,3)l and R(2,2)l, that constrain the temperatures and densities of the environments. The profiles of the H3+ R(3,3)l line, which is due only to gas in the GC, closely matches the differences between the H3+ R(1,1)l and CO line profiles, just as it does for previously studied sightlines in the GC. Absorption in the R(2,2)l line of H3+ is present in J1747 at velocities between -60 and +100 km/s. This is the second clear detection of this line in the interstellar medium after GCIRS 3 in the Central Cluster. The temperature of the absorbing gas in this velocity range is 350 K, significantly warmer than in the diffuse clouds in other parts of the Central Molecular Zone. This indicates that the absorbing gas is local to Sgr B molecular cloud complex. The warm and diffuse gas revealed by Oka et al. (2005) apparently extends to ~100 pc, but there is a hint that its temperature is somewhat lower in the line of sight to J1743 than elsewhere in the GC. The observation of H3+ toward J1747 is compared with the recent Herschel observation of H2O+ toward Sgr B2 and their chemical relationship and remarkably similar velocity profiles are discussed.Comment: 6 pages, 3 figures, 2 tables, Accepted for publication in Publications of the Astronomical Society of Japa

Environmental dependence of 8um luminosity functions of galaxies at z~0.8: Comparison between RXJ1716.4+6708 and the AKARI NEP deep field

We aim to reveal environmental dependence of infrared luminosity functions (IR LFs) of galaxies at z~0.8 using the AKARI satellite. We construct restframe 8um IR LFs in the cluster region RXJ1716.4+6708 at z=0.81, and compare them with a blank field using the AKARI North Ecliptic Pole deep field data at the same redshift. AKARI's wide field of view (10'x10') is suitable to investigate wide range of galaxy environments. AKARI's 15um filter is advantageous here since it directly probes restframe 8um at z~0.8, without relying on a large extrapolation based on a SED fit, which was the largest uncertainty in previous work. We have found that cluster IR LFs at restframe 8um have a factor of 2.4 smaller L^* and a steeper faint-end slope than that of the field. Confirming this trend, we also found that faint-end slopes of the cluster LFs becomes flatter and flatter with decreasing local galaxy density. These changes in LFs cannot be explained by a simple infall of field galaxy population into a cluster. Physics that can preferentially suppress IR luminous galaxies in high density regions is required to explain the observed results.Comment: Accepted for publication in A&A AKARI special issu

Charmless B→PV,VVB \to PV, VV decays and new physics effects in the mSUGRA model

By employing the QCD factorization approach, we calculate the new physics contributions to the branching radios of the two-body charmless $B \to PV$ and $B \to VV$ decays in the framework of the minimal supergravity (mSUGRA) model. we choose three typical sets of the mSUGRA input parameters in which the Wilson coefficient $C_{7\gamma}(m_b)$ can be either SM-like (the case A and C) or has a flipped-sign (the case B). We found numerically that (a) the SUSY contributions are always very small for both case A and C; (b) for those tree-dominated decays, the SUSY contributions in case B are also very small; (c) for those QCD penguin-dominated decay modes, the SUSY contributions in case B can be significant, and can provide an enhancement about $30$ to the branching ratios of $B \to K^*(\pi,\phi,\rho)$ and $K \phi$ decays, but a reduction about $30$ to $B\to K(\rho, \omega)$ decays; and (d) the large SUSY contributions in the case B may be masked by the large theoretical errors dominated by the uncertainty from our ignorance of calculating the annihilation contributions in the QCD factorization approach.Comment: 34 pages, 8 PS figures, this is the correct version

Study of Magnetic Excitation in Singlet-Ground-State Magnets CsFeCl3_3 and RbFeCl3_3 by Nuclear Magnetic Relaxation

The temperature dependences of spin-lattice relaxation time $T_1$ of $^{133}$Cs in CsFeCl$_3$ and $^{87}$Rb in RbFeCl$_3$ were measured in the temperature range between 1.5 K and 22 K, at various fields up to 7 T applied parallel (or perpendicular) to the c-axis, and the analysis was made on the basis of the DCEFA. The mechanism of the nuclear magnetic relaxation is interpreted in terms of the magnetic fluctuations which are characterized by the singlet ground state system. In the field region where the phase transition occurs, $T_1^{-1}$ exhibited the tendency of divergence near $T_{\rm N}$, and this feature was ascribed to the transverse spin fluctuation associated with the mode softening at the $K$-point. It was found that the damping constant of the soft mode is remarkably affected by the occurrence of the magnetic ordering at lower temperature, and increases largely in the field region where the phase transition occurs.Comment: 12 pages, 18 figures, submitted to J. Phys. Soc. Jp